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Start free with EleplanYunis-Varon syndrome
ORPHA:3472Malformation syndrome
Also called Cleidocranial dysplasia-micrognathia-absent thumbs syndrome
What it is
A rare, genetic, multiple congenital malformation syndrome, characterized by cleidocranial dysplasia (wide fontanelles, calvaria dysostosis, absent or hypoplastic clavicles), absent thumbs and halluces, hypoplastic distal and medial phalanges of fingers, pelvic dysplasia with hip dislocations. Dysmorphic features include sparse scalp hair, protruding eyes, low-set ears, anteverted nares, midfacial hypoplasia, tented upper lip, high arched palate, and micrognathia. Brain malformations are frequently associated. From birth, affected individuals tend to be significantly hypotonic and present with global developmental delay, and respiratory, feeding and swallowing difficulties.
Key facts
- Prevalence
- <1 / 1 000 000
- Age of onset
- Antenatal, Neonatal
- Inheritance
- Autosomal recessive
- Classified as
- Malformation syndrome
Prevalence figures describe populations, not individuals, and are often estimates from a single study. Where the figure is an incidence or a birth prevalence, it says so.
Signs and symptoms
Very common80–99%
3Common30–79%
63- Abnormality of dental structure
- Abnormality of finger
- Abnormality of the occipital bone
- Abnormal parietal bone morphology
- Abnormal pelvis bone morphology
- Abnormal pinna morphology
- Absent sternal ossification
- Absent thumb
- Agenesis of corpus callosum
- Anteverted nares
- Aplasia/hypoplasia of the 1st metatarsal
- Aplasia/Hypoplasia of the clavicles
- Aplasia/Hypoplasia of the nails
- Aplasia/Hypoplasia of the nipples
- Aplasia of the 1st metacarpal
- Arrhinencephaly
- Bilateral microphthalmos
- Broad secondary alveolar ridge
- Cardiomegaly
- Cardiomyopathy
- Cataract
- Decreased skull ossification
- Dolichocephaly
- Generalized neonatal hypotonia
- Global developmental delay
- High forehead
- High, narrow palate
- Hypertelorism
- Hypoplasia of the frontal lobes
- Hypospadias
- Low-set ears
- Metatarsus adductus
- Micrognathia
- Micropenis
- Neuronal loss in central nervous system
- Pachygyria
- Postnatal growth retardation
- Premature loss of primary teeth
- Primary microcephaly
- Proptosis
- Pulmonary arterial hypertension
- Redundant neck skin
- Rocker bottom foot
- Sclerocornea
- Severe failure to thrive
- Short chin
- Shortening of all distal phalanges of the toes
- Short finger
- Short middle phalanx of finger
- Short philtrum
- Short stature
- Short toe
- Short upper lip
- Single transverse palmar crease
- Sparse eyebrow
- Sparse eyelashes
- Sparse scalp hair
- Syndactyly
- Tapered finger
- Thin vermilion border
- Upslanted palpebral fissure
- Ventricular septal defect
- Wide cranial sutures
Sometimes5–29%
23- Aplasia/Hypoplasia of the scapulae
- Atrial septal defect
- Cerebellar hypoplasia
- Clitoral hypertrophy
- Cryptorchidism
- Flared metaphysis
- Gingival recession
- Glossoptosis
and 15 more in this range
These ranges are how often a sign appears across everyone diagnosed, not a prediction for one person — most people have some of these and not others. Orphanet also records findings that are specifically absent in this disease; those are in the data but not listed here.
Genes
ICD-10 codes
ICD-10 has no distinct code for most rare diseases, so many are filed under the nearest available one. A shared code identifies the group, not this disease — the ORPHAcode above is what identifies it.
Related health topics
Reached through the ICD-10 categories this disease is filed under, so these describe the broader group rather than this disease specifically.
Cross-references
Orphadata Science: Free access data from Orphanet. © INSERM 1999. Data version 2026-06-23. Available under CC BY 4.0. This is a reference, not medical advice.
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